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Flagship Pioneering, Inc.
Actively hiring
Senior UAS Systems Integration Engineer II
- Workplace
- On-site
- Commitment
- Full-time
- Seniority
- Senior
- Salary
- $95,000-130,000/yr
- Posted
Location
Cambridge, United StatesBoulder, United States
This role joins Flagship Pioneering's growing hardware team as a UAS Systems Integration Engineer II, working at the intersection of firmware, electronics, and airframe design. The engineer will help drive the technical architecture of a fixed-wing UAV platform, co-developing the autopilot stack, airframe, payload integration, and C2 link from the ground up. Working within a small, high-caliber team, the role moves the system from early prototype toward a hardened, field-deployable platform capable of executing precision scientific missions in demanding international environments. The ideal candidate brings end-to-end systems thinking and a builder's instinct, equally comfortable in CAD, oscilloscope traces, and firmware source code.
Responsibilities
- Configure, tune, and iterate on autopilot firmware for fixed-wing airframes, including PID tuning, failsafe logic, auto modes, and mission scripting using ArduPlane;
- Read, modify, and debug ArduPilot source code (C++) to extend autopilot capabilities, implement custom behaviors, and resolve vehicle-level anomalies;
- Design, build, and iterate on fixed-wing airframes across aerodynamics, structures, and propulsion integration — optimized for payload capacity, endurance, and operational resilience;
- Support flight test campaigns alongside flight operations — pre-flight vehicle readiness checks, ground station and telemetry setup, in-field troubleshooting, and rapid turnaround of firmware and hardware fixes between flights;
- Develop C2 link architecture, RF link budgets, electronics integration, and spectrum compliance strategies for long-range BVLOS operations;
- Design and implement custom ground station software and user interfaces to support mission planning, real-time monitoring, and post-flight analysis;
- Integrate and validate onboard science payloads and sensors, ensuring electrical compatibility, data integrity, and mission performance;
- Analyze flight logs (MAVExplorer, Flight Review) to diagnose anomalies, validate performance models, and drive systematic improvements to vehicle reliability;
- Design and fabricate custom electronics, including PCB layout for power distribution, sensor interfacing, and avionics integration;
- Document designs, test results, firmware change logs, and component specifications to build a scalable engineering knowledge base for the drone program.
Requirements
- Bachelor's or Master's degree in aerospace engineering, electrical engineering, mechanical engineering, computer science, or a closely related field; equivalent hands-on experience will be considered.
- BS + 2-4 or MS + 0-2 years of hands-on hardware/software systems integration experience required, in real-mission or production contexts;
- Proficiency in C++ and Python, with demonstrated experience reading, modifying, and debugging ArduPilot source code; strong familiarity with MAVLink protocol and GCS tooling;
- Hands-on experience with ArduPilot or PX4 based autopilot systems, preferably in production-ready or real-mission contexts;
- Experience with RF link design, C2 spectrum compliance, antenna selection, and electronics integration for long-range UAV systems;
- Electronics design and integration experience required; PCB design and fabrication experience is a strong plus;
- Ability to work hands-on across the full hardware stack — from firmware and avionics to airframe fabrication and field deployment — in a small team environment;
- Strong documentation and engineering rigor: changelogs, test reports, design rationale, and component specifications suitable for future scaling and external review;
- Genuine passion for building novel aerial systems with real-world scientific impact, and comfort operating at the frontier of hardware, firmware, and systems engineering.
Nice to have
- FAA Part 107 Remote Pilot Certificate is a plus (or the ability to obtain is required); BVLOS waiver experience is a strong plus;
- Experience with atmospheric sensing instrumentation or science payload integration is a strong plus;
Benefits
- The salary range for this role is $95,000 - $130,000. Compensation for the role will depend on a number of factors, including a candidate's qualifications, skills, competencies, and experience. Protocos currently offers healthcare coverage, annual incentive program, retirement benefits and a broad range of other benefits. Compensation and benefits information is based on Protocos's good faith estimate as of the date of publication and may be modified in the future.